By the way there are many myths in guitar building and one of them, started by Dan Earlywine is that 1/2 the string should be exposed above the nut...... This is BS and it makes no difference if the nut top and the string tops are flush.
I have Dan Erlewine's books and find his advise highly detailed and very good. What he recommends is that you remove any material from the nut that is not required to keep the string snuggly in its slot.
This seems highly defenceable.
In this respect he says you should make the high E & B strings a little deeper than half so they stay put while bending. The reason you remove this material is that this way you ensure that you wil not get any chance of string buzz and there is less chance of strings catching in the slot which can lead to tuning problems after tuning and bends. For the same reasons he suggests that your fan out the slot at the back of the nut and that you ramp the slot smoothly up (and that you use a pencil to line the slot with a little graphite to help the string slide) and goes into great detail and he provides very rational and obvious explanations for all his techniques.
I have found Dan's set up book invaluable and have had people comment on the action and playability of my guitars.
I agree there are many myths in guitar building but don't think Dan's techniques fit into that category.
Dom